Supplementary Table 1

This page indicates the current status of sequencing and assembling of the PEDE ESTs.
Numbers in this table will be automatically updated when a new assembly is released.

Sequencing

Library	Tissue	Origin	Clones	EST reads	High quality reads
ADR01	Adrenal gland	LWD	383	9,792	9,051
AMP01	Alveolar macrophages	LWD	1,070	9,791	7,709
DCI01	Dendritic cells (immature)	Landrace	416	11,327	9,464
ITT01	Intestine	LWD	891	9,792	9,185
LNG01	Lung	LWD	1,121	9,599	7,906
LVR01	Liver	LWD	644	9,120	8,281
LVRM1	Liver	Meishan	1,537	19,572	17,531
MLN01	Mesenteric lymph nodes	LWD	928	9,792	8,967
OVR01	Ovary	LWD	1,142	9,598	8,223
OVRM1	Ovary	Meishan	2,958	20,735	17,904
PBL01	PBMC	LWD	692	10,272	8,973
SKNB1	Skin	Berkshire	361	9,504	5,982
SPL01	Spleen	LWD	1,214	9,764	8,973
TCH01	Trachea	LWD	1,082	9,888	7,900
TES01	Testis	LWD	418	10,752	7,416
THY01	Thymus	LWD	1,927	11,522	10,184
UTR01	Uterus	LWD	1,231	9,550	8,982
Total			18,015	190,370	162,631

Clones: Clones whose inserts have been fully sequenced.
EST reads: All EST reads performed to date.
High quality reads: EST reads (≥ 100bp stretch with Phred QV ≥ 20) and composing contigs/singlets.
PBMC: Peripheral blood mononuclear cells.
LWD: (Landrace x Large White) x Duroc.

Assemblies

Release: 20060611

Contigs	10,562
Singlets	57,276

Number of members	Contigs
2	4,206
3	1,633
4	896
5	605
6	460
7	346
8	269
9	208
10	162
11 - 20	861
21 - 30	299
31 - 40	164
41 - 50	112
51 - 100	177
101 - 200	84
201 - 300	29
301 - 400	16
401 - 500	17
501 - 1000	12
1001 +	6