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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
AMP01_0036_A12
Library: AMP01 (Alveolar macrophages)
Individual: LWD7, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 1,922)
[FASTA format sequence]
CTTAAGAGTC GCGCTGTAAG AAGCAACAAC CTCTCTTCTC CGCCATCTGC TCGGCGCCGC
AAAACAGCAA CTATGCGTGA GTGCATCTCC ATCCACGTTG GCCAAGCTGG TGTCCAGATC
GGCAATGCCT GCTGGGAGCT CTACTGCCTG GAACACGGCA TCCAGCCCGA TGGCCAGATG
CCGAGTGACA AGACCATTGG GGGAGGAGAT GACTCCTTCA ACACCTTCTT CAGTGAGACA
GGCGCTGGCA AGCATGTGCC CAGGGCAGTG TTTGTAGACC TGGAACCCAC AGTCATTGAT
GAAGTTCGCA CTGGCACCTA CCGCCAGCTC TTCCACCCTG AGCAGCTCAT CACAGGCAAG
GAAGATGCTG CCAATAACTA TGCCCGAGGT CACTACACCA TTGGCAAGGA GATCATTGAC
CTCGTCTTGG ACCGAATTCG GAAACTGGTA CGTTTATTCT CAAGGATAAA GTAAATTAAT
GCACCTAAGG GAGCCATTTG AAATACGCTC TTTCTTTCAA ACACAGAATT GAAATGTGAC
ACAATTCTTC CTTTCTAGGT TTTTAAAAAT TCAATTAAAA TAGGAAATAT TTGATGTCAC
TTTATAAATA TCAATGCAGG TGTTTTTAAT AAAGAAATGC TGGGTAATTT CAGGTATCAC
AGAAAGCAAT AACTGTATCT TTCTCGTATT CCTCTTTTCT AACAGGCTGA CCAGTGCACA
GGTCTTCAGG GCTTCTTGGT TTTCCACAGC TTTGGCGGGG GAACGGGTTC TGGGTTCACC
TCCCTGCTGA TGGAACGTCT CTCTGTCGAT TATGGCAAGA AGTCCAAGCT GGAGTTCTCC
ATTTACCCAG CCCCCCAGGT TTCCACAGCT GTAGTTGAGC CCTACAACTC CATCCTCACC
ACCCACACCA CCCTGGAGCA CTCTGATTGT GCCTTCACGG TAGACAATGA GGCCATCTAT
GACATCTGTC GTAGAAACCT CGATATTGAA CGCCCAACCT ACACTAACCT GAATAGGTTG
ATAGGTCAGA TTGTGTCCTC CATCACTGCT TCCCTGAGGT TTGATGGGGC CCTGAATGTT
GATCTGACAG AATTCCAGAC CAACCTGGTG CCCTATCCCC GCATCCATTT CCCTCTGGCC
ACATATGCCC CTGTCATCTC TGCTGAGAAA GCCTACCCTG AACAGCTTTC TGTAGCAGAG
ATCACCAATG CTTGCTTTGA GCCAGCCAAC CAGATGGTGA AATGTGACCC TCGCCATGGT
AAATACATGG CCTGCTGCCT GTTGTACCGT GGTGACGTGG TTCCCAAAGA CGTCAATGCC
GCCATCGCCA CCATCAAGAC CAAGCGTACC GTCCAGTTTG TGGACTGGTG CCCCACTGGC
TTCAAGGTTG GCATTAATTA CCAGCCCCCC ACTGTGGTCC CCGGTGGAGA CCTGGCCAAG
TACAGCGGGC AGTGTGCATG CTGAGCAACA CCACAGCCAT CGCTGAGGCC TGGGCTCGCC
TGGACCACAA GTTTGACCTG ATGTATGCCA AGCGTGCCTT TGTTCACTGG TACGTGGGTG
AGGGCATGGA GGAAGGAGAG TTTTCTGAGG CCCGTGAGGA CATGGCTGCC CTTGAGAAGG
ATTACGAGGA GGTTGGTGTG GATTCTGTTG AAGGAGAGGG AGAGGAAGAA GGCGAGGAAT
ACTAAAGTTA AAATGTCACA AAGGTGCTGC TTTTACAGGG AAGCTTATTC TGTTTTAAAC
ATTGAAAAGT TGTGGTCTGA TCAGTTAATT TGTATGTAGC AGTGAATACT CTCATATACA
ATTGCTGACC TATGCTTTAA AACACGACGC TTTGTTACAG ACCCAAGTTA TTCATTTCTC
TGGGTTTGAA TAAAGTATTC CCTGTCTTAA ACAAAAAAAA AAAAAAAAAA AAAAAAAAAA
AA
Deduced amino acid sequence: (length: 224) [FASTA format sequence]
MERLSVDYGK KSKLEFSIYP APQVSTAVVE PYNSILTTHT TLEHSDCAFT VDNEAIYDIC
RRNLDIERPT YTNLNRLIGQ IVSSITASLR FDGALNVDLT EFQTNLVPYP RIHFPLATYA
PVISAEKAYP EQLSVAEITN ACFEPANQMV KCDPRHGKYM ACCLLYRGDV VPKDVNAAIA
TIKTKRTVQF VDWCPTGFKV GINYQPPTVV PGGDLAKYSG QCAC
BLAST on RefSeq (Human): 
TOP
BLAST on RefSeq (Mouse): TOP
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | LOC608147 | "similar to tubulin, alpha 1" | 470 | e-163 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| MGC138024 | "similar to tubulin, alpha 1" | 470 | e-163 | |
|
| TUBA1 | "tubulin, alpha 1 (testis specific)" | 467 | e-162 | |
|
| LOC539882 | "similar to tubulin, alpha 1" | 466 | e-162 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
BLAST on UniGene: TOP
| | Definition | Score | E value | FL |
|---|
 |
 | Homo sapiens cDNA FLJ37398 fis, clone BRAMY2027467, highly similar to TUBULIN ALPHA-1 CHAIN | 1503 | 0.0 | |
|
|
| Mus musculus tubulin, alpha 1, mRNA (cDNA clone MGC:102492 IMAGE:6306481), complete cds | 1473 | 0.0 | O |
|
|
| Mus musculus tubulin, alpha 2, mRNA (cDNA clone MGC:102558 IMAGE:6311394), complete cds | 1368 | 0.0 | O |
|
|
| Mus musculus cDNA clone MGC:103284 IMAGE:4162287, complete cds | 1318 | 0.0 | O |
|
|
| PREDICTED: Mus musculus similar to tubulin, alpha 2; tubulin alpha 2 (LOC434428), mRNA | 1312 | 0.0 | O |
|
|
| AL568148 Homo sapiens FETAL BRAIN Homo sapiens cDNA clone CS0DF031YD16 3-PRIME, mRNA sequence | 1231 | 0.0 | |
|
|
| PREDICTED: Mus musculus similar to alpha-tubulin (LOC268545), mRNA | 1193 | 0.0 | O |
|
|
| 971758 BARC 5BOV Bos taurus cDNA 3', mRNA sequence | 1086 | 0.0 | |
|
|
| UI-H-DH0-aum-e-21-0-UI.s1 NCI_CGAP_DH0 Homo sapiens cDNA clone IMAGE:5871356 3', mRNA sequence | 971 | 0.0 | |
|
|
| Homo sapiens alpha-tubulin isotype H2-alpha, mRNA (cDNA clone MGC:71736 IMAGE:5268074), complete cds | 819 | 0.0 | O |
Assembly Member: TOP